TopFIND 4.0

Q42404: U1 small nuclear ribonucleoprotein 70 kDa

General Information

Protein names
- U1 small nuclear ribonucleoprotein 70 kDa
- U1 snRNP 70 kDa
- U1-70K
- snRNP70
Gene names RNU1
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q42404

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP 
        70         80         90        100        110        120 
PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ KRERIHKLRL EKGVEKAAED 
       130        140        150        160        170        180 
LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG 
       190        200        210        220        230        240 
YAFIEYMHTR DMKAAYKQAD GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE 
       250        260        270        280        290        300 
EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH 
       310        320        330        340        350        360 
RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY 
       370        380        390        400        410        420 
EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY DKMEEDDFRY EREYKRSKRS 
   
ESREYVR

Isoforms

- Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa

Sequence View

        10         20         30         40         50         60 
MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP 
        70         80         90        100        110        120 
PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ KRERIHKLRL EKGVEKAAED 
       130        140        150        160        170        180 
LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG 
       190        200        210        220        230        240 
YAFIEYMHTR DMKAAYKQAD GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE 
       250        260        270        280        290        300 
EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH 
       310        320        330        340        350        360 
RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY 
       370        380        390        400        410        420 
EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY DKMEEDDFRY EREYKRSKRS 
   
ESREYVR



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Protease Assignment Confidence:


Evidence Names:


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Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q42404-1-unknown MGDSGD... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q42404-1-unknown MGDSGD... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt88368

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...REYVR 427 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)