TopFIND 4.0

Q8L7M4: Small RNA degrading nuclease 5

General Information

Protein names
- Small RNA degrading nuclease 5
- 3.1.-.-
Gene names SDN5
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q8L7M4

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MSSSKRKRGA ETAAEDCDDG TDKSNTGNSF FDIYGPEAKA ELDFKSPETT LNLQDVQGLV 
        70         80         90        100        110        120 
TWVLAEGFMP SWVFIKNKPL IPKVVLLYLP GLDAALYLSH SKTLSSLKSC CGNPMALLAL 
       130        140        150        160        170        180 
SCVVDEMRTI DTILTCKGRK KKTVTSSVEP PPLVSSPEAC NLMGKSFVEL TKDIPFPVSY 
       190        200        210        220        230        240 
YTLSQKEMEQ NGYTFEKLEL TPTLPAPSGS CPPEIVALDC EMCITKEGLE LTRVTLVDIQ 
       250        260        270        280        290        300 
GQVLLDKLVM PTNPITDYNT RYSGITAVMM EGVTTTLKDI QEEFLKLVFK ETILVGHSLE 
       310        320        330        340        350        360 
NDLLSLKISH NLVIDTAVLY KHPHGRSYKT KLRILAKKFL AREIQESESG HDSAEDAKAA 
       370        380        390        400        410        420 
MDLALLKIKH GPDFGSPPEV IRKKLLAVLN ESGKTTSIID NINIVKRYAS ESSNAIPVSS 
       430        440        450        460        470        480 
DDEALSKAVK EVKNKRSQFV WTQFSELNAH FQSRADDPQK LNSRLAEMIS LLTCNKKSGL 
       490        500        510        520        530        540 
KKSNVSPETK EILKKMNERV QSLYAALPTN AMFIVCTGHG DTSIVHRVRK MLKDEDEIGF 
       550        560    
DREKLVKVLE ELQAQAEVAL CFVGIKQ

Isoforms

- Isoform 2 of Small RNA degrading nuclease 5

Sequence View

        10         20         30         40         50         60 
MSSSKRKRGA ETAAEDCDDG TDKSNTGNSF FDIYGPEAKA ELDFKSPETT LNLQDVQGLV 
        70         80         90        100        110        120 
TWVLAEGFMP SWVFIKNKPL IPKVVLLYLP GLDAALYLSH SKTLSSLKSC CGNPMALLAL 
       130        140        150        160        170        180 
SCVVDEMRTI DTILTCKGRK KKTVTSSVEP PPLVSSPEAC NLMGKSFVEL TKDIPFPVSY 
       190        200        210        220        230        240 
YTLSQKEMEQ NGYTFEKLEL TPTLPAPSGS CPPEIVALDC EMCITKEGLE LTRVTLVDIQ 
       250        260        270        280        290        300 
GQVLLDKLVM PTNPITDYNT RYSGITAVMM EGVTTTLKDI QEEFLKLVFK ETILVGHSLE 
       310        320        330        340        350        360 
NDLLSLKISH NLVIDTAVLY KHPHGRSYKT KLRILAKKFL AREIQESESG HDSAEDAKAA 
       370        380        390        400        410        420 
MDLALLKIKH GPDFGSPPEV IRKKLLAVLN ESGKTTSIID NINIVKRYAS ESSNAIPVSS 
       430        440        450        460        470        480 
DDEALSKAVK EVKNKRSQFV WTQFSELNAH FQSRADDPQK LNSRLAEMIS LLTCNKKSGL 
       490        500        510        520        530        540 
KKSNVSPETK EILKKMNERV QSLYAALPTN AMFIVCTGHG DTSIVHRVRK MLKDEDEIGF 
       550        560    
DREKLVKVLE ELQAQAEVAL CFVGIKQ



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Evidence Names:


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Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q8L7M4-1-unknown MSSSKR... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q8L7M4-1-unknown MSSSKR... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt89169

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...VGIKQ 567 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)