TopFIND 4.0

Q9FFG1: Small RNA degrading nuclease 2

General Information

Protein names
- Small RNA degrading nuclease 2
- 3.1.-.-
Gene names SDN2
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9FFG1

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MEDVLATAEG VVLVKLVKVA QKLGLKGENG TWKEFLDFYD KQLGSSSLSD PSKRRKDDLV 
        70         80         90        100        110        120 
AFLTTLKKKE DLQLLAKSLK LDNDVFEKFK KKSLDETAEQ RLVRMTLTHD EYPLDYLFPS 
       130        140        150        160        170        180 
NAEDWVRTGL GKKKMEPTKI EMIAIDCEMV LCEDGSEAVV RVAAVDRDLK VILDEFVKPN 
       190        200        210        220        230        240 
QPVVDYRTFI TGLTAQDLEK ATISVVDIQE KLLMFISEDT ILVGQSLNHD LKVLKVDHAR 
       250        260        270        280        290        300 
VIDTSLVFKY NYDGTRRPLR LKRPSLNYLC KCILGYEVQK EGVPHNCVHD AEAAMKLVLA 
       310        320        330        340        350        360 
ILDNGAETSV PLSKEMLEAE KSKLYLHRIP CNVPYEELNG VVSRDIPHEV KPSKKQDRHY 
       370        380        390        400        410        420 
YSAIVVFKSP EEANQAFENI AGDFGKDSRG LSQKQIFLEP SSSEPRLYVL VRKMVEDDLV 
       430        440        450        460    
GEVIAEENNA SSKKRKRENH SKGTRDRRRC KPLSRRKQRS NVKRRR

Isoforms

- Isoform 2 of Small RNA degrading nuclease 2

Sequence View

        10         20         30         40         50         60 
MEDVLATAEG VVLVKLVKVA QKLGLKGENG TWKEFLDFYD KQLGSSSLSD PSKRRKDDLV 
        70         80         90        100        110        120 
AFLTTLKKKE DLQLLAKSLK LDNDVFEKFK KKSLDETAEQ RLVRMTLTHD EYPLDYLFPS 
       130        140        150        160        170        180 
NAEDWVRTGL GKKKMEPTKI EMIAIDCEMV LCEDGSEAVV RVAAVDRDLK VILDEFVKPN 
       190        200        210        220        230        240 
QPVVDYRTFI TGLTAQDLEK ATISVVDIQE KLLMFISEDT ILVGQSLNHD LKVLKVDHAR 
       250        260        270        280        290        300 
VIDTSLVFKY NYDGTRRPLR LKRPSLNYLC KCILGYEVQK EGVPHNCVHD AEAAMKLVLA 
       310        320        330        340        350        360 
ILDNGAETSV PLSKEMLEAE KSKLYLHRIP CNVPYEELNG VVSRDIPHEV KPSKKQDRHY 
       370        380        390        400        410        420 
YSAIVVFKSP EEANQAFENI AGDFGKDSRG LSQKQIFLEP SSSEPRLYVL VRKMVEDDLV 
       430        440        450        460    
GEVIAEENNA SSKKRKRENH SKGTRDRRRC KPLSRRKQRS NVKRRR



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Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9FFG1-1-unknown MEDVLA... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9FFG1-1-unknown MEDVLA... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt89168

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...VKRRR 466 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)