TopFIND 4.0

Q9FVW4: Regulator of nonsense transcripts UPF3 {ECO:0000305}

General Information

Protein names
- Regulator of nonsense transcripts UPF3 {ECO:0000305}
- Nonsense mRNA reducing factor UPF3 {ECO:0000305}
- Up-frameshift suppressor 3 homolog {ECO:0000305}
- AtUpf3 {ECO:0000303|PubMed:16098107}
Gene names UPF3
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9FVW4

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MKEPLQKKKV VVRHLPPSLS QSDLLSQIDP RFADRYNWVS FRPGKSSYKN QKYSRAYVSF 
        70         80         90        100        110        120 
KAPEDVYEFA AFFNGHVFVN EKGAQFKAIV EYAPSQRVPK PSDKKDPREG SISKDPDYLE 
       130        140        150        160        170        180 
FLKVIAQPVE NLPSAEIQLE RREAEQSGAS KAAPIVTPLM EFIRQKRATV MGPQGLSDIR 
       190        200        210        220        230        240 
RGGRRTRVVS ANKPSPRPSK RNSEKKKYVE KESSKNVPRK TTADVSSSKP DYRQSNSSGK 
       250        260        270        280        290        300 
ELPGNETAAI IDSSPPGIAL TMDSGKKKIL LLRSKDRDNP DNPPPQPEQH IDTNLSRNST 
       310        320        330        340        350        360 
DSRQNQKSDV GGRLIKGILL RNDSRPSQSS TFVQSEQRVE PSEAENYKRP SRPANTRAGK 
       370        380        390        400        410        420 
DYHTSGTISE KQERRTRNKD RPDRVMWAPR RDGSEDQPLS SAGNNGEVKD RMFSQRSGEV 
       430        440        450        460        470        480 
VNSSGGHTLE NGSARHSSRR VGGRNRKEEV VIGEGKTSRR GSGGGPSSHE KQMWIQKPSS 
   
GT

Isoforms

- Isoform 2 of Regulator of nonsense transcripts UPF3

Sequence View

        10         20         30         40         50         60 
MKEPLQKKKV VVRHLPPSLS QSDLLSQIDP RFADRYNWVS FRPGKSSYKN QKYSRAYVSF 
        70         80         90        100        110        120 
KAPEDVYEFA AFFNGHVFVN EKGAQFKAIV EYAPSQRVPK PSDKKDPREG SISKDPDYLE 
       130        140        150        160        170        180 
FLKVIAQPVE NLPSAEIQLE RREAEQSGAS KAAPIVTPLM EFIRQKRATV MGPQGLSDIR 
       190        200        210        220        230        240 
RGGRRTRVVS ANKPSPRPSK RNSEKKKYVE KESSKNVPRK TTADVSSSKP DYRQSNSSGK 
       250        260        270        280        290        300 
ELPGNETAAI IDSSPPGIAL TMDSGKKKIL LLRSKDRDNP DNPPPQPEQH IDTNLSRNST 
       310        320        330        340        350        360 
DSRQNQKSDV GGRLIKGILL RNDSRPSQSS TFVQSEQRVE PSEAENYKRP SRPANTRAGK 
       370        380        390        400        410        420 
DYHTSGTISE KQERRTRNKD RPDRVMWAPR RDGSEDQPLS SAGNNGEVKD RMFSQRSGEV 
       430        440        450        460        470        480 
VNSSGGHTLE NGSARHSSRR VGGRNRKEEV VIGEGKTSRR GSGGGPSSHE KQMWIQKPSS 
   
GT



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Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9FVW4-1-unknown MKEPLQ... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9FVW4-1-unknown MKEPLQ... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt87284

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...PSSGT 482 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    ...PSSGT 482 inferred from isoform by sequence similarity unknown TopFIND inferred from TCt82902

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)