TopFIND 4.0

Q9LQ02: DNA-directed RNA polymerase IV subunit 1

General Information

Protein names
- DNA-directed RNA polymerase IV subunit 1
- DNA-directed RNA polymerase D subunit 1
- AtNRPD1a
- Nuclear RNA polymerase D 1a
- 2.7.7.6
- Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3
- Protein SILENCING DEFECTIVE 4
- Protein SILENCING MOVEMENT DEFICIENT 2
- RNA polymerase IV subunit 1a
- POL IV 1a
Gene names NRPD1
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9LQ02

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG 
        70         80         90        100        110        120 
SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC KYIRKKQFQI TEDQPERCRY 
       130        140        150        160        170        180 
CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID 
       190        200        210        220        230        240 
ESCLKPTRRI ITHAQVYALL LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN 
       250        260        270        280        290        300 
GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT 
       310        320        330        340        350        360 
PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER 
       370        380        390        400        410        420 
LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS LMDGDTVLMN RPPSIHQHSL 
       430        440        450        460        470        480 
IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR 
       490        500        510        520        530        540 
QNGRNLLSLG QDSLTAAYLV NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ 
       550        560        570        580        590        600 
WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV 
       610        620        630        640        650        660 
LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM 
       670        680        690        700        710        720 
VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA VSAFKDAYRD VQALAYRYGD 
       730        740        750        760        770        780 
QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK 
       790        800        810        820        830        840 
GKDSTTTESY VPYGVIENSF LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR 
       850        860        870        880        890        900 
DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL 
       910        920        930        940        950        960 
ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV 
       970        980        990       1000       1010       1020 
STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES VVSSLNEQYK SRNRELKLDI 
      1030       1040       1050       1060       1070       1080 
VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ 
      1090       1100       1110       1120       1130       1140 
GIKKVNILWT DRPKAPKRNG NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG 
      1150       1160       1170       1180       1190       1200 
RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN 
      1210       1220       1230       1240       1250       1260 
AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD 
      1270       1280       1290       1300       1310       1320 
QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK ATVQPFGLLH SAFLKDIKVL 
      1330       1340       1350       1360       1370       1380 
DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK 
      1390       1400       1410       1420       1430       1440 
IGPGVKGIRV AKSKHGDSCC FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK 
      1450    
NGTLESGGFS ENP

Isoforms



Sequence View



Filter Information:


(REFRESH)

Directness:


Physiological Relevance:


Evidence Codes:


Methodology:


Perturbation of System:


Biological System:


Protease Assignment Confidence:


Evidence Names:


Database:


Lab:



Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9LQ02-1-unknown MEDDCE... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...FSENP 1453 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)