TopFIND 4.0

Q9M322: General transcription and DNA repair factor IIH subunit TFB1-3

General Information

Protein names
- General transcription and DNA repair factor IIH subunit TFB1-3
- AtTFB1-3 {ECO:0000303|PubMed:15645454}
- TFIIH subunit TFB1-3
- RNA polymerase II transcription factor B subunit 1-3
Gene names TFB1-3
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9M322

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP 
        70         80         90        100        110        120 
PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE PNKLVVLTPA EQLSMAEFEL 
       130        140        150        160        170        180 
RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK 
       190        200        210        220        230        240 
PSTDGRTNRV TFNLTSEIIF QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK 
       250        260        270        280        290        300 
NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR 
       310        320        330        340        350        360 
DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG 
       370        380        390        400        410        420 
EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR DYFESQQGNI LSEPRGAKAS 
       430        440        450        460        470        480 
KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL 
       490        500        510        520        530        540 
DRLPKSTKDE VIHHWTSIQE LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS 
       550        560        570    
VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT

Isoforms

- Isoform 2 of Probable RNA polymerase II transcription factor B subunit 1-3 - Isoform 3 of Probable RNA polymerase II transcription factor B subunit 1-3 - Isoform 2 of General transcription and DNA repair factor IIH subunit TFB1-3 - Isoform 3 of General transcription and DNA repair factor IIH subunit TFB1-3

Sequence View

        10         20         30         40         50         60 
MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP 
        70         80         90        100        110        120 
PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE PNKLVVLTPA EQLSMAEFEL 
       130        140        150        160        170        180 
RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK 
       190        200        210        220        230        240 
PSTDGRTNRV TFNLTSEIIF QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK 
       250        260        270        280        290        300 
NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR 
       310        320        330        340        350        360 
DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG 
       370        380        390        400        410        420 
EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR DYFESQQGNI LSEPRGAKAS 
       430        440        450        460        470        480 
KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL 
       490        500        510        520        530        540 
DRLPKSTKDE VIHHWTSIQE LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS 
       550        560        570    
VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT         10         20         30         40         50         60 
MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP 
        70         80         90        100        110        120 
PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE PNKLVVLTPA EQLSMAEFEL 
       130        140        150        160        170        180 
RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK 
       190        200        210        220        230        240 
PSTDGRTNRV TFNLTSEIIF QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK 
       250        260        270        280        290        300 
NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR 
       310        320        330        340        350        360 
DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG 
       370        380        390        400        410        420 
EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR DYFESQQGNI LSEPRGAKAS 
       430        440        450        460        470        480 
KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL 
       490        500        510        520        530        540 
DRLPKSTKDE VIHHWTSIQE LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS 
       550        560        570    
VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT         10         20         30         40         50         60 
MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP 
        70         80         90        100        110        120 
PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE PNKLVVLTPA EQLSMAEFEL 
       130        140        150        160        170        180 
RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK 
       190        200        210        220        230        240 
PSTDGRTNRV TFNLTSEIIF QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK 
       250        260        270        280        290        300 
NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR 
       310        320        330        340        350        360 
DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG 
       370        380        390        400        410        420 
EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR DYFESQQGNI LSEPRGAKAS 
       430        440        450        460        470        480 
KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL 
       490        500        510        520        530        540 
DRLPKSTKDE VIHHWTSIQE LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS 
       550        560        570    
VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT         10         20         30         40         50         60 
MEKRVKYKSF VKDPGTLGSL ELSEVMLLFV PNDPKSDLKL KVQTHNIKSQ KYTKEGSNKP 
        70         80         90        100        110        120 
PWLNLTSKQG RSHIFEFENY PDMHACRDFI TKALAKCEEE PNKLVVLTPA EQLSMAEFEL 
       130        140        150        160        170        180 
RFKLLRENSE LQKLHKQFVE SKVLTEDEFW STRKKLLGKD SIRKSKQQMG LKSMMVSGIK 
       190        200        210        220        230        240 
PSTDGRTNRV TFNLTSEIIF QIFAEKPAVR QAFINYVPKK MTEKDFWTKY FRAEYLYSTK 
       250        260        270        280        290        300 
NTAVAAAEAA EDEELAVFLK PDEILAQEAR QKMRRVDPTL DMDADEGDDY THLMDHGIQR 
       310        320        330        340        350        360 
DGTNDIIEPQ NDQLKRSLLQ DLNRHAAVVL EGRCINVQSE DTRIVAEALT RAKQVSKADG 
       370        380        390        400        410        420 
EITKDANQER LERMSRATEM EDLQAPQNFP LAPLSIKDPR DYFESQQGNI LSEPRGAKAS 
       430        440        450        460        470        480 
KRNVHEAYGL LKESILVIRM TGLSDPLIKP EVSFEVFSSL TRTISTAKNI LGKNPQESFL 
       490        500        510        520        530        540 
DRLPKSTKDE VIHHWTSIQE LVRHFWSSYP ITTTYLSTKV GKLKDAMSNT YSLLDAMKQS 
       550        560        570    
VQSDLRHQVS LLVRPMQQAL DAAFQHYESD LQRRTAKIT



Filter Information:


(REFRESH)

Directness:


Physiological Relevance:


Evidence Codes:


Methodology:


Perturbation of System:


Biological System:


Protease Assignment Confidence:


Evidence Names:


Database:


Lab:



Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9M322-1-unknown MEKRVK... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9M322-1-unknown MEKRVK... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt91975

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...TAKIT 579 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    ...TAKIT 579 inferred from isoform by sequence similarity unknown TopFIND inferred from TCt87594

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)