TopFIND 4.0

Q9SU25: Transcription initiation factor IIF subunit alpha

General Information

Protein names
- Transcription initiation factor IIF subunit alpha
- TFIIF-alpha
- General transcription factor IIF subunit 1
- Transcription initiation factor RAP74 homolog
- AtRAP74
Gene names RAP74
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9SU25

1

N-termini

2

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MSNCLQLNTS CVGCGSQSDL YGSSCRHMTL CLKCGRTMAQ NKSKCHECGT VVTRLIREYN 
        70         80         90        100        110        120 
VRAAAPTDKN YFIGRFVTGL PNFKKGSENK WSLRKDIPQG RQFTDAQREK LKNKPWILED 
       130        140        150        160        170        180 
ETGQFQYQGH LEGSQSATYY LLVMQNKEFV AIPAGSWYNF NKVAQYKQLT LEEAEEKMKN 
       190        200        210        220        230        240 
RRKTADGYQR WMMKAANNGP ALFGEVDNEK ESGGTSGGGG RGRKKSSGGD EEEGNVSDRG 
       250        260        270        280        290        300 
DEDEEEEASR KSRLGLNRKS NDDDDEEGPR GGDLDMDDDD IEKGDDWEHE EIFTDDDEAV 
       310        320        330        340        350        360 
GNDPEEREDL LAPEIPAPPE IKQDEDDEEN EEEEGGLSKS GKELKKLLGK ANGLDESDED 
       370        380        390        400        410        420 
DDDDSDDEEE TNYGTVTNSK QKEAAKEEPV DNAPAKPAPS GPPRGTPPAK PSKGKRKLND 
       430        440        450        460        470        480 
GDSKKPSSSV QKKVKTENDP KSSLKEERAN TVSKSNTPTK AVKAEPASAP ASSSSAATGP 
       490        500        510        520        530        540 
VTEDEIRAVL MEKKQVTTQD LVSRFKARLK TKEDKNAFAN ILRKISKIQK NAGSQNFVVL 
       550        560        570        580        590        600 
REKCQPKPGK RESRVNKLNI RSNLQPRKME LVTEDEIRKV LMEKKQLTTL ELVMRFKERL 
       610        620        630        640    
TTTEDKDSFS HILKKIAKLQ KNPGSEKFVV VLRDNVTPLA SDLTRLSIS

Isoforms

- Isoform 2 of Transcription initiation factor IIF subunit alpha

Sequence View

        10         20         30         40         50         60 
MSNCLQLNTS CVGCGSQSDL YGSSCRHMTL CLKCGRTMAQ NKSKCHECGT VVTRLIREYN 
        70         80         90        100        110        120 
VRAAAPTDKN YFIGRFVTGL PNFKKGSENK WSLRKDIPQG RQFTDAQREK LKNKPWILED 
       130        140        150        160        170        180 
ETGQFQYQGH LEGSQSATYY LLVMQNKEFV AIPAGSWYNF NKVAQYKQLT LEEAEEKMKN 
       190        200        210        220        230        240 
RRKTADGYQR WMMKAANNGP ALFGEVDNEK ESGGTSGGGG RGRKKSSGGD EEEGNVSDRG 
       250        260        270        280        290        300 
DEDEEEEASR KSRLGLNRKS NDDDDEEGPR GGDLDMDDDD IEKGDDWEHE EIFTDDDEAV 
       310        320        330        340        350        360 
GNDPEEREDL LAPEIPAPPE IKQDEDDEEN EEEEGGLSKS GKELKKLLGK ANGLDESDED 
       370        380        390        400        410        420 
DDDDSDDEEE TNYGTVTNSK QKEAAKEEPV DNAPAKPAPS GPPRGTPPAK PSKGKRKLND 
       430        440        450        460        470        480 
GDSKKPSSSV QKKVKTENDP KSSLKEERAN TVSKSNTPTK AVKAEPASAP ASSSSAATGP 
       490        500        510        520        530        540 
VTEDEIRAVL MEKKQVTTQD LVSRFKARLK TKEDKNAFAN ILRKISKIQK NAGSQNFVVL 
       550        560        570        580        590        600 
REKCQPKPGK RESRVNKLNI RSNLQPRKME LVTEDEIRKV LMEKKQLTTL ELVMRFKERL 
       610        620        630        640    
TTTEDKDSFS HILKKIAKLQ KNPGSEKFVV VLRDNVTPLA SDLTRLSIS



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Protease Assignment Confidence:


Evidence Names:


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Protein Neighborhood

Domains & Features

1 N-termini - 2 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9SU25-1-unknown MSNCLQ... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9SU25-1-unknown MSNCLQ... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt91393

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...VLREKC 543 inferred from isoform by sequence similarity unknown TopFIND inferred from TCt87011
    ...RLSIS 649 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)