TopFIND 4.0

Q9SX79: Polyadenylate-binding protein RBP47C

General Information

Protein names
- Polyadenylate-binding protein RBP47C
- Poly(A)-binding protein RBP47C
- RNA-binding protein 47C
- AtRBP47C
Gene names RBP47C
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9SX79

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII 
        70         80         90        100        110        120 
PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN KTIWVGDLHH WMDEAYLNSS 
       130        140        150        160        170        180 
FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW 
       190        200        210        220        230        240 
ASFSTGEKRL ENNGPDLSIF VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG 
       250        260        270        280        290        300 
YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD 
       310        320        330        340        350        360 
IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN 
       370        380        390        400        410        420 
GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY NGYGYMVPQP DPRMYPAAPY 
       430    
YPMYGGHQQQ VS

Isoforms

- Isoform 2 of Polyadenylate-binding protein RBP47C

Sequence View

        10         20         30         40         50         60 
MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII 
        70         80         90        100        110        120 
PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN KTIWVGDLHH WMDEAYLNSS 
       130        140        150        160        170        180 
FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW 
       190        200        210        220        230        240 
ASFSTGEKRL ENNGPDLSIF VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG 
       250        260        270        280        290        300 
YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD 
       310        320        330        340        350        360 
IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN 
       370        380        390        400        410        420 
GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY NGYGYMVPQP DPRMYPAAPY 
       430    
YPMYGGHQQQ VS



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Protease Assignment Confidence:


Evidence Names:


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Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9SX79-1-unknown MADVKI... 1 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9SX79-1-unknown MADVKI... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt87029

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...QQQVS 432 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)