TopFIND 4.0

Q9ZNX9: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial

General Information

Protein names
- RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
- Sigma factor E
- Sigma-E
- RNA polymerase sigma factor sig5
- Atsig5
- Sigma factor 5
Gene names SIGE
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9ZNX9

1

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK 
        70         80         90        100        110        120 
HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA AARLESIYKL SPATTTLVED 
       130        140        150        160        170        180 
DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD 
       190        200        210        220        230        240 
KKVTKRQQEE EKIERLVRDY SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE 
       250        260        270        280        290        300 
VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH 
       310        320        330        340        350        360 
EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF 
       370        380        390        400        410        420 
GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY REVLRAAKPV LSLNSKHSVT 
       430        440        450        460        470        480 
QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE 
       490        500        510    
IAGNLNISRE MVRKHEVKAL MKLKHQARVD YLRQYIV

Isoforms

- Isoform 2 of RNA polymerase sigma factor sigE, chloroplastic/mitochondrial

Sequence View

        10         20         30         40         50         60 
MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK 
        70         80         90        100        110        120 
HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA AARLESIYKL SPATTTLVED 
       130        140        150        160        170        180 
DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD 
       190        200        210        220        230        240 
KKVTKRQQEE EKIERLVRDY SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE 
       250        260        270        280        290        300 
VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH 
       310        320        330        340        350        360 
EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF 
       370        380        390        400        410        420 
GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY REVLRAAKPV LSLNSKHSVT 
       430        440        450        460        470        480 
QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE 
       490        500        510    
IAGNLNISRE MVRKHEVKAL MKLKHQARVD YLRQYIV



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Protein Neighborhood

Domains & Features

1 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9ZNX9-35-unknown AFKADD... 35 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9ZNX9-35-unknown AFKADD... 35 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt115242

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...RQYIV 517 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    ...RQYIV 517 inferred from isoform by sequence similarity unknown TopFIND inferred from TCt85362

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)