TopFIND 4.0

Q9ZSL6: RNA polymerase sigma factor sigD, chloroplastic

General Information

Protein names
- RNA polymerase sigma factor sigD, chloroplastic
- Sigma factor D
- Sigma-D
- RNA polymerase sigma factor sig4
- Atsig4
- Sigma factor 4
Gene names SIGD
Organism Arabidopsis thaliana
Protease Family
Protease ID
Chromosome location
UniProt ID Q9ZSL6

2

N-termini

1

C-termini

0

Cleavages

0

Substrates

Sequence

        10         20         30         40         50         60 
MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV 
        70         80         90        100        110        120 
VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN AGVEAEAETI SVPVVGASRS 
       130        140        150        160        170        180 
GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR 
       190        200        210        220        230        240 
EKITRCYRRL VVSIATGYQG KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK 
       250        260        270        280        290        300 
QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL 
       310        320        330        340        350        360 
AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES 
       370        380        390        400        410    
RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK KLRNVHNVND LKIYYSSSE

Isoforms

- Isoform 2 of RNA polymerase sigma factor sigD, chloroplastic

Sequence View

        10         20         30         40         50         60 
MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV 
        70         80         90        100        110        120 
VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN AGVEAEAETI SVPVVGASRS 
       130        140        150        160        170        180 
GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR 
       190        200        210        220        230        240 
EKITRCYRRL VVSIATGYQG KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK 
       250        260        270        280        290        300 
QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL 
       310        320        330        340        350        360 
AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES 
       370        380        390        400        410    
RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK KLRNVHNVND LKIYYSSSE



Filter Information:


(REFRESH)

Directness:


Physiological Relevance:


Evidence Codes:


Methodology:


Perturbation of System:


Biological System:


Protease Assignment Confidence:


Evidence Names:


Database:


Lab:



Protein Neighborhood

Domains & Features

2 N-termini - 1 C-termini - 0 Cleavages - 0 Substrates

N-termini
    Name Sequence Position Modification Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMID)
    Q9ZSL6-1-unknown MATTIP... 1 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt89743
    Q9ZSL6-53-unknown GDTTVD... 53 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot
    Q9ZSL6-53-unknown GDTTVD... 53 inferred from isoform by sequence similarity unknown TopFIND inferred from TNt115667

C-termini

    Name Sequence Position Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)
    ...YSSSE 419 inferred from electronic annotation electronic annotation UniProtKB inferred from uniprot

Cleavages

    Protease Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)

Substrates

    Substrate Position Sequence Evidence type Method Source (database) Source (Lab) Evidence name Publications (PMIDs)