TopFIND 4.0

P62306: Small nuclear ribonucleoprotein F

General Information

Protein names	- Small nuclear ribonucleoprotein F - snRNP-F - Sm protein F - Sm-F - SmF
Gene names	SNRPF
Organism	Homo sapiens
Protease Family
Protease ID
Chromosome location
UniProt ID	P62306

4

N-termini

3

C-termini

4

Cleavages

0

Substrates

Sequence

10 20 30 40 50 60
MSLPLNPKPF LNGLTGKPVM VKLKWGMEYK GYLVSVDGYM NMQLANTEEY IDGALSGHLG
70 80
EVLIRCNNVL YIRGVEEEEE DGEMRE

Isoforms

Sequence View

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Protease Assignment Confidence:

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Protein Neighborhood

Domains & Features

4 N-termini - 3 C-termini - 4 Cleavages - 0 Substrates

N-termini

Name	Sequence	Position	Modification	Evidence type	Method	Source (database)	Source (Lab)	Evidence name	Publications (PMID)
P62306-2-unknown	MSLPLN...	1		inferred from electronic annotation	electronic annotation	UniProtKB		inferred from uniprot
P62306-2-Acetylation	SLPLNP...	2	acetylation-	inferred from electronic annotation	electronic annotation	UniProtKB		inferred from uniprot
P62306-2-Acetylation	SLPLNP...	2	acetylation-		other		CNRS/ISV	Large_scale_NTA_Human
P62306-16-unknown	GKPVMV...	16		inferred from cleavage	unknown	TopFIND		Inferred from cleavage TC7641
P62306-16-unknown	GKPVMV...	16		inferred from cleavage	unknown	TopFIND		Inferred from cleavage TC6117
P62306-53-	GALSGH...	53			Subtiligase Based Positive Selection		Wells	apoptotic_RPMI_Dox	23264352

C-termini

Name	Sequence	Position	Evidence type	Method	Source (database)	Source (Lab)	Evidence name	Publications (PMIDs)
	...LNGLTG	15	inferred from cleavage	unknown	TopFIND		Inferred from cleavage TC7641
	...LNGLTG	15	inferred from cleavage	unknown	TopFIND		Inferred from cleavage TC6117
	...EEEEDG	81	inferred from cleavage	unknown	TopFIND		Inferred from cleavage TC3102
	...EEEEDG	81	inferred from cleavage	unknown	TopFIND		Inferred from cleavage TC1258
	...GEMRE	86	inferred from electronic annotation	electronic annotation	UniProtKB		inferred from uniprot

Cleavages

Protease	Position	Sequence	Evidence type	Method	Source (database)	Source (Lab)	Evidence name	Publications (PMIDs)
CATS_HUMAN	15	GLTG.\|.GKPV	inferred from experiment	unknown	MEROPS	Schilling O	Biniossek ML et al.:Proteomic identification of pro... (C01.060)	21967108,
CATL1_HUMAN	15	GLTG.\|.GKPV	inferred from experiment	unknown	MEROPS	Schilling O	Biniossek ML et al.:Proteomic identification of pro... (C01.060)	21967108,
CASP8_HUMAN	81	EEDG.\|.GEMR	inferred from experiment	unknown	MEROPS	van Venrooij WJ	Malmegrim de Farias KC et al.:Caspase-mediated cleavage of th... (C14.001)	12728255,
CASP1_HUMAN	81	EEDG.\|.GEMR	inferred from experiment	unknown	MEROPS	van Venrooij WJ	Malmegrim de Farias KC et al.:Caspase-mediated cleavage of th... (C14.001)	12728255,

Substrates

Substrate	Position	Sequence	Evidence type	Method	Source (database)	Source (Lab)	Evidence name	Publications (PMIDs)